Similar HOG based on domains to

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

HOG:E0794303.3by.45a with 4 members (Peptidase S1 domain-containing protein)

Opisthokonta / Metazoa / Eumetazoa / Bilateria / Protostomia / Ecdysozoa / Panarthropoda /

... /

Arthropoda / Mandibulata / Pancrustacea / Hexapoda / Neoptera / Endopterygota / Diptera / Culicomorpha / Culicidae /

Culicinae /

Completeness score: 1.00

‹

Representative domain architecture:

Prevalence of repr. domain architecture within HOG:

53.7%

This HOG has 1550 similar HOGs:

HOG ID	Deepest level	HOG size	Representative Domain Architecture	Prevalence	Similarity
HOG:E0805469	Eukaryota	752		52.9%	2
HOG:E0617530	melanogaster group	473		56.2%	2
HOG:E0759100	Deuterostomia	375		59.5%	2
HOG:E0784047	Eumetazoa	315		71.4%	2
HOG:E0760145	Deuterostomia	279		35.5%	2
HOG:E0784917	Eumetazoa	276		82.6%	2
HOG:E0754203	Vertebrata	210		93.3%	2
HOG:E1001704	Bacteria	181		52.5%	2
HOG:E1016676	Bacteria	178		100.0%	2
HOG:E0749156	Gnathostomata	173		75.1%	2
HOG:E0739204	Euteleostomi	170		80.0%	2
HOG:E0752676	Vertebrata	169		52.1%	2
HOG:E0758227	Chordata	167		91.6%	2
HOG:E0756384	Chordata	165		75.2%	2
HOG:E0752416	Vertebrata	162		91.4%	2
HOG:E0805024	Eukaryota	160		88.1%	2
HOG:E0824137	Eukaryota	160		48.1%	2
HOG:E0745478	Gnathostomata	159		73.0%	2
HOG:E0630555	Endopterygota	158		72.8%	2
HOG:E0745898	Gnathostomata	158		87.3%	2
HOG:E0745496	Gnathostomata	157		90.4%	2
HOG:E0747251	Gnathostomata	156		71.2%	2
HOG:E0692137	Percomorphaceae	154		86.4%	2
HOG:E0746994	Gnathostomata	153		47.7%	2
HOG:E0739565	Euteleostomi	148		79.1%	2

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